Roi2Atlas converts an image and a set of annotated ROIs to an atlas. Each unique annotation is assigned an integer label, and voxels within the ROIs with a given annotation are given an integer intensity value equal to the label value. A table of labels and annotations is printed to standard output.
Running the program without any arguments produces the following output:
Usage: Roi2Atlas [options] image roiFile
-?,--help Displays this help message.
-f,--fill-holes Fill holes between ROIs and assign label from the
nearest ROI.
-ver,--version Prints the software build version, and exits.