Package com.xinapse.multisliceimage.Analyze

The package com.xinapse.multisliceimage.Analyze is used to represent and handle the Analyze Medical Image file format, and the NIFTI-1 extension of this format.

See:
Description

Class Summary

AFNIExtendedData	This abstract class handles the NIFTI 1.1 extended data.
Analyze75Header	This class represents a multi-dimensional Analyze 7.5 image header file.
Analyze75Image	This class is a representation of a multi-dimensional image in the Analyze 7.5 format.
AnalyzeFileFilter	A file filter for Analyze header files.
ANZColourMapping	Class to handle Analyze lookup files (colour mapping files).
ANZDebug	Enables and disables debugging messages for the Analyze package.
ANZHeader	An abstract Analyze header representation.
ANZImage	This is an abstract class that is the superclass of a multi-dimensional image in the Analyze 7.5 format or the new NIFTI-1 format.
CommentExtendedData	This class handles the NIFTI 1.1 non-NUL ASCII text extended data.
DICOMExtendedData	This class handles NIFTI 1.1 DICOM extended data.
InfoExtendedData	NIFTI 1.1 extended data that allows artibrary text to be associated with an image.
NIFTIFileFilter	A file filter for NIFTI images.
NIFTIHeader	This class represents a multi-dimensional NIFTI image header file.
NIFTIImage	This class is a representation of a multi-dimensional image in the NIFTI-1 format (see The Neuroimaging Informatics Technology Initiative), an extension of the original Analyze 7.5 format (see The Biomedical Imaging Resource).
UnknownExtendedData	This class handles private (unknown-format) NIFTI 1.1 extended data.
XCEDEExtendedData	This class handles NIFTI 1.1 XCEDE extended data.
XMLExtendedData	This abstract class handles NIFTI 1.1 XML extended data.

Enum Summary

ANZPixFormat	This class represents the pixel formats (data types) that can be used in Analyze, and NIFTI (extended Analyze) images.
NIFTIIntent	This class represents the NIFTI intents.
NIFTIXForm	This class represents the NIFTI qforms and sforms.
SliceOrder	This class represents the timing pattern of the slice acquisition.
TUnits	This class represents the NIFTI units of time.
XYZUnits	This class represents the NIFTI units of length.

Exception Summary

ANZException

Signals that an error in the Analyze package has occurred.

Package com.xinapse.multisliceimage.Analyze Description

The package com.xinapse.multisliceimage.Analyze is used to represent and handle the Analyze Medical Image file format, and the NIFTI-1 extension of this format. All NIFTI-1 data types are implemented by this package except:

• ANZPixFormat.NIFTI_UINT64, and
• ANZPixFormat.NIFTI_COMPLEX256,

since these have no native Java data types capable of storing these data types.

Of course, only the standard Analyze 7.5 data types may be used with Analyze75Image images.

Both big-endian and little-endian byte ordering are implemented and supported. When reading exsiting images, the byte order is auto detected from the header file. When existing images are copied or modified, the original byte order is retained. For images newly-created from scratch by this package, the byte ordering is always the native byte order.