com.xinapse.multisliceimage.roi

Class ROIStreamTokenizer

java.lang.Object

java.io.StreamTokenizer

com.xinapse.multisliceimage.roi.ROIStreamTokenizer

public class ROIStreamTokenizer
extends java.io.StreamTokenizer

An ROIStreamTokenizer used to parse ROIs from an input stream. The ROIs can either be Xinapse-type ROIs, or dispim-type ROIs. Xinapse-style ROIs can be read using this Tokenizer in two modes:

• Normal mode.
• Clinical trials mode.

Clinical trials mode is enabled by setting the System Property "Platform.GCP". In clinical trials mode, the ROIStreamTokenizer expects to encounter a checksum at the end of the input stream. If a checksum is not found before the end of the file is reached, or if the checksum is invalid, then an IOException is thrown. A checksum looks like:

   Begin Checksum
   NNNNNNNN
   End Checksum
   

where NNNNNNNN is the value of the checksum.

In normal mode, the checksum, if found, is ignored.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ANNOTATIONTOKEN
static java.lang.String	AREATOKEN
static java.lang.String	COLOURTOKEN
static java.lang.String	DEVTOKEN
static java.lang.String	LENGTHTOKEN
static java.lang.String	MAXTOKEN
static java.lang.String	MEANTOKEN
static java.lang.String	MEDIANTOKEN
static java.lang.String	MINTOKEN
static java.lang.String	SLICETOKEN
static java.lang.String	STDTOKEN

Fields inherited from class java.io.StreamTokenizer

nval, sval, TT_EOF, TT_EOL, TT_NUMBER, TT_WORD, ttype

Method Summary

Modifier and Type	Method and Description
static void	main(java.lang.String[] args) Runs the self-test for the ROIStreamTokenizer class.

Methods inherited from class java.io.StreamTokenizer

commentChar, eolIsSignificant, lineno, lowerCaseMode, nextToken, ordinaryChar, ordinaryChars, parseNumbers, pushBack, quoteChar, resetSyntax, slashSlashComments, slashStarComments, toString, whitespaceChars, wordChars

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SLICETOKEN

public static final java.lang.String SLICETOKEN

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Constant Field Values

ANNOTATIONTOKEN

public static final java.lang.String ANNOTATIONTOKEN

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Constant Field Values

COLOURTOKEN

public static final java.lang.String COLOURTOKEN

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Constant Field Values

AREATOKEN

public static final java.lang.String AREATOKEN

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Constant Field Values

MEANTOKEN

public static final java.lang.String MEANTOKEN

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Constant Field Values

STDTOKEN

public static final java.lang.String STDTOKEN

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Constant Field Values

MEDIANTOKEN

public static final java.lang.String MEDIANTOKEN

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Constant Field Values

DEVTOKEN

public static final java.lang.String DEVTOKEN

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Constant Field Values

MINTOKEN

public static final java.lang.String MINTOKEN

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Constant Field Values

MAXTOKEN

public static final java.lang.String MAXTOKEN

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Constant Field Values

LENGTHTOKEN

public static final java.lang.String LENGTHTOKEN

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Constant Field Values

Method Detail

main

public static void main(java.lang.String[] args)

Runs the self-test for the ROIStreamTokenizer class.

Parameters:

args - are ignored.