Serialized Form

Package com.xinapse.apps.perfusion

Class com.xinapse.apps.perfusion.DCEMRIFrame extends com.xinapse.apps.perfusion.PerfusionFrame implements Serializable

Serialized Fields

modelPanel

com.xinapse.apps.perfusion.DCEMRIModel.Panel modelPanel

analysisTypePanel

com.xinapse.apps.perfusion.AnalysisType.Panel analysisTypePanel

Class com.xinapse.apps.perfusion.PerfusionFrame extends AbstractDynamicFrame implements Serializable

Serialized Fields

presetsMenu

com.xinapse.preset.PresetsMenu<PresetType extends com.xinapse.preset.AbstractPreset> presetsMenu

mriButton

javax.swing.JRadioButton mriButton

ctButton

javax.swing.JRadioButton ctButton

teField

javax.swing.JTextField teField

imageTypePanel

com.xinapse.apps.perfusion.ImageType.T1WeightedPanel imageTypePanel

relaxivityPanel

javax.swing.JPanel relaxivityPanel

tePanel

javax.swing.JPanel tePanel

arterialRelaxivityLabel

javax.swing.JLabel arterialRelaxivityLabel

tissueRelaxivityLabel

javax.swing.JLabel tissueRelaxivityLabel

arterialHaematocritLabel

javax.swing.JLabel arterialHaematocritLabel

arterialRelaxivityField

javax.swing.JTextField arterialRelaxivityField

tissueRelaxivityField

javax.swing.JTextField tissueRelaxivityField

arterialHaematocritField

javax.swing.JTextField arterialHaematocritField

tissueHaematocritField

javax.swing.JTextField tissueHaematocritField

arterialHaematocritPanel

javax.swing.JPanel arterialHaematocritPanel

tissueHaematocritPanel

javax.swing.JPanel tissueHaematocritPanel

svdThresholdSpinner

javax.swing.JSpinner svdThresholdSpinner

svdPanel

javax.swing.JPanel svdPanel

arrivalTimeUnitsPanel

com.xinapse.apps.perfusion.ContrastArrivalTimeUnits.Panel arrivalTimeUnitsPanel

contrastArrivalTimeField

javax.swing.JTextField contrastArrivalTimeField

scanTimeNumberLabel

javax.swing.JLabel scanTimeNumberLabel

scanTimeNumberUnitsLabel

javax.swing.JLabel scanTimeNumberUnitsLabel

analysisEndTimeField

javax.swing.JTextField analysisEndTimeField

analysisEndTimeNumberLabel

javax.swing.JLabel analysisEndTimeNumberLabel

analysisEndTimeNumberUnitsLabel

javax.swing.JLabel analysisEndTimeNumberUnitsLabel

leadLagPanel

com.xinapse.apps.perfusion.LeadLagPanel leadLagPanel

aifSelectionModePanel

com.xinapse.apps.perfusion.AIFSelectionMode.Panel aifSelectionModePanel

Package com.xinapse.dicom

Class com.xinapse.dicom.BadVRException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.DatePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

dayField

javax.swing.JTextField dayField

monthField

javax.swing.JTextField monthField

yearField

javax.swing.JTextField yearField

Class com.xinapse.dicom.DCMAbortException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.DCMErrorException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.DCMException extends java.lang.Exception implements Serializable

Class com.xinapse.dicom.DCMFatalException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.DCMWarningException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.DebuggingOptionsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

DULCheckBox

javax.swing.JCheckBox DULCheckBox

SRVCheckBox

javax.swing.JCheckBox SRVCheckBox

Class com.xinapse.dicom.DicomdirFileChooser extends javax.swing.JFileChooser implements Serializable

Class com.xinapse.dicom.InvalidDateException extends java.lang.Exception implements Serializable

Class com.xinapse.dicom.InvalidInputException extends java.lang.Exception implements Serializable

Class com.xinapse.dicom.InvalidTagException extends com.xinapse.dicom.DCMException implements Serializable

Class com.xinapse.dicom.Modality.ComboBox extends javax.swing.JComboBox implements Serializable

Package com.xinapse.dynamic

Class com.xinapse.dynamic.AbstractDynamicFrame extends com.xinapse.util.MultiContrastAnalysisFrame implements Serializable

Serialized Fields

timeBetweenImagesField

javax.swing.JTextField timeBetweenImagesField

The JTextField to set the time between images in seconds.

thresholdField

javax.swing.JTextField thresholdField

The JTextField to set the intensity threshold.

registerCheckBox

javax.swing.JCheckBox registerCheckBox

A check box to turn on registration.

smoothingFilterCheckBox

javax.swing.JCheckBox smoothingFilterCheckBox

A check box to turn on spatial filtering.

fwhmLabel

javax.swing.JLabel fwhmLabel

A label before the FWHMTextField.

fwhmTextField

com.xinapse.util.XinapseFormattedTextField fwhmTextField

A JFormattedTextField to set the FWHM of the smoothing filter.

fwhmMmLabel

javax.swing.JLabel fwhmMmLabel

A label after the fwhmTextField.

nSteadyStatesSpinner

javax.swing.JSpinner nSteadyStatesSpinner

maskSelectorPanel

com.xinapse.dynamic.DynamicMaskSelectorWorker.Panel maskSelectorPanel

A JPanel for selecting an image mask.

dynamicModelPanel

javax.swing.JPanel dynamicModelPanel

The JPanel that contains the analysis setup. Components for the analysis model should be added to this JPanel.

outputImageSelectionPanel

ImageSelectionPanel outputImageSelectionPanel

ImageSelectionPanel used to select the output images basename.

Class com.xinapse.dynamic.DynamicMaskSelectorWorker.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

useBrainFinderCheckBox

javax.swing.JCheckBox useBrainFinderCheckBox

maskImageCheckBox

javax.swing.JCheckBox maskImageCheckBox

maskROIsCheckBox

javax.swing.JCheckBox maskROIsCheckBox

maskLabel

javax.swing.JLabel maskLabel

maskImageSelectionPanel

ImageSelectionPanel maskImageSelectionPanel

roiMaskSelectionPanel

ROIFileSelectionPanel roiMaskSelectionPanel

messageShower

MessageShower messageShower

Class com.xinapse.dynamic.DynamicModel.SpecifierPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

parentFrame

AbstractDynamicFrame parentFrame

The AbstractDynamicFrame that is the parent of this SpecifierPanel.

actionListeners

java.util.List<E> actionListeners

A List of ActionListeners that is maintained by this SpecifierPanel.

modelChangedListener

com.xinapse.dynamic.DynamicModel.SpecifierPanel.ModelChangedListener modelChangedListener

The ActionListener that should be notified when the DynamicModel specified in this SpecifierPanel is changed. This ActionListener should be added to all UI items that specify the DynamicModel.

Class com.xinapse.dynamic.DynamicModelSelection.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.dynamic.SliceOrderPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

doCorrectionCheckBox

javax.swing.JCheckBox doCorrectionCheckBox

ascendingButton

javax.swing.JRadioButton ascendingButton

descendingButton

javax.swing.JRadioButton descendingButton

interleavedCheckBox

javax.swing.JCheckBox interleavedCheckBox

preferencesNodeName

java.lang.String preferencesNodeName

actionListeners

java.util.List<E> actionListeners

Package com.xinapse.filter

Class com.xinapse.filter.FilterSelection.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.GaussianBlurFilter.GaussianBlurSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

fwhmXTextField

com.xinapse.util.XinapseFormattedTextField fwhmXTextField

fwhmYTextField

com.xinapse.util.XinapseFormattedTextField fwhmYTextField

fwhmZTextField

com.xinapse.util.XinapseFormattedTextField fwhmZTextField

throughSliceLabel

javax.swing.JLabel throughSliceLabel

zMMLabel

javax.swing.JLabel zMMLabel

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.LaplacianFilter.LaplacianSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

kernelSizeComboBox

javax.swing.JComboBox kernelSizeComboBox

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.MedianFilter.MedianSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

kernelSizeComboBox

javax.swing.JComboBox kernelSizeComboBox

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.MorphologicalOperator.MorphologicalSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

opPanel

com.xinapse.filter.MorphologicalOperator.Op.Panel opPanel

kernelSizeComboBox

javax.swing.JComboBox kernelSizeComboBox

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.SharpenFilter.SharpenSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

kernelSizeComboBox

javax.swing.JComboBox kernelSizeComboBox

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.SobelFilter.SobelSpecifierPanel extends SpatialFilter.SpecifierPanel implements Serializable

Serialized Fields

twoDButton

javax.swing.JRadioButton twoDButton

threeDButton

javax.swing.JRadioButton threeDButton

typePanel

com.xinapse.filter.SobelFilter.SobelType.Panel typePanel

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.filter.SpatialFilter.SpecifierPanel extends javax.swing.JPanel implements Serializable

Package com.xinapse.geom3d

Class com.xinapse.geom3d.ImageDisplayCanvas3D extends javax.media.j3d.Canvas3D implements Serializable

Serialized Fields

AXIS_COLOUR

javax.vecmath.Color3f AXIS_COLOUR

ambientLight

javax.media.j3d.AmbientLight ambientLight

directionalLight

javax.media.j3d.DirectionalLight directionalLight

parentFrame

com.xinapse.geom3d.ImageDisplayFrame3D parentFrame

objRoot

javax.media.j3d.BranchGroup objRoot

transformGroup

javax.media.j3d.TransformGroup transformGroup

currentFlipTransform

javax.media.j3d.Transform3D currentFlipTransform

imageObjectGroup

javax.media.j3d.BranchGroup imageObjectGroup

boundingBoxBranchGroup

javax.media.j3d.BranchGroup boundingBoxBranchGroup

axesTransformGroup

javax.media.j3d.TransformGroup axesTransformGroup

boundingBox

com.xinapse.geom3d.Cuboid boundingBox

showBoundingBox

boolean showBoundingBox

showAxes

boolean showAxes

cutOutUpdaterThread

com.xinapse.geom3d.ImageDisplayCanvas3D.CutOutUpdaterThread cutOutUpdaterThread

rotateBehavior

com.xinapse.geom3d.XinapseMouseRotate rotateBehavior

doNotWarnAboutHandedness

boolean doNotWarnAboutHandedness

createScreenCapture

boolean createScreenCapture

suggestedFileName

java.lang.String suggestedFileName

Class com.xinapse.geom3d.ImageDisplayFrame3D extends javax.swing.JFrame implements Serializable

Serialized Fields

displayer

com.xinapse.displayer.ImageDisplayer displayer

imageDisplayCanvas3D

com.xinapse.geom3d.ImageDisplayCanvas3D imageDisplayCanvas3D

controlPanel3D

com.xinapse.geom3d.ControlPanel3D controlPanel3D

userPanel

javax.swing.JPanel userPanel

statusText

javax.swing.JTextField statusText

resetViewButton

javax.swing.JButton resetViewButton

doneButton

com.xinapse.util.DoneButton doneButton

setViewDialog

com.xinapse.geom3d.SetViewDialog setViewDialog

imageSelectionDialogs

java.util.List<E> imageSelectionDialogs

quitMe

boolean quitMe

Class com.xinapse.geom3d.IsoSurfaceSelectionDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

saveVRMLMenuItem

javax.swing.JMenuItem saveVRMLMenuItem

parentFrame

com.xinapse.geom3d.ImageDisplayFrame3D parentFrame

imageSelectionPanel

ImageSelectionPanel imageSelectionPanel

fidelityPanel

com.xinapse.geom3d.Fidelity.Panel fidelityPanel

cutOutCheckBox

javax.swing.JCheckBox cutOutCheckBox

optionalItemsPanel

javax.swing.JPanel optionalItemsPanel

thresholdSliderPanel

com.xinapse.util.IntensitySliderPanel thresholdSliderPanel

statusText

javax.swing.JTextField statusText

alphaPanel

com.xinapse.util.AlphaPanel alphaPanel

colorButton

com.xinapse.util.ColorSelectionButton colorButton

shininessSpinner

javax.swing.JSpinner shininessSpinner

fillButton

javax.swing.JRadioButton fillButton

wireFrameButton

javax.swing.JRadioButton wireFrameButton

pointsButton

javax.swing.JRadioButton pointsButton

doneButton

com.xinapse.util.DoneButton doneButton

imageBranchGroup

javax.media.j3d.BranchGroup imageBranchGroup

currentImageName

java.lang.String currentImageName

isoSurfaceGenerator

com.xinapse.geom3d.IsoSurfaceGenerator isoSurfaceGenerator

isoSurfaceLoaderThread

com.xinapse.geom3d.IsoSurfaceSelectionDialog.IsoSurfaceLoaderThread isoSurfaceLoaderThread

computedThreshold

java.lang.Float computedThreshold

imageLoaderWorker

com.xinapse.util.ImageLoaderWorker imageLoaderWorker

Class com.xinapse.geom3d.VRMLFileSelectionPanel extends com.xinapse.util.FileSelectionPanel implements Serializable

Package com.xinapse.io

Class com.xinapse.io.UnsetFileException extends java.lang.Exception implements Serializable

Package com.xinapse.loadableimage

Class com.xinapse.loadableimage.InvalidImageException extends java.lang.Exception implements Serializable

Class com.xinapse.loadableimage.ParameterNotSetException extends java.lang.Exception implements Serializable

Package com.xinapse.multisliceimage

Class com.xinapse.multisliceimage.ImageFileChooser extends javax.swing.JFileChooser implements Serializable

Class com.xinapse.multisliceimage.ImageFileChooser.LoadChooser extends ImageFileChooser implements Serializable

Class com.xinapse.multisliceimage.ImageFileChooser.SaveChooser extends ImageFileChooser implements Serializable

Class com.xinapse.multisliceimage.ImagePreview extends javax.swing.JComponent implements Serializable

Serialized Fields

previewIcon

PreviewIcon previewIcon

file

java.io.File file

Class com.xinapse.multisliceimage.ImageSaveException extends java.lang.Exception implements Serializable

Class com.xinapse.multisliceimage.ImageSelectionGroupPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

parentFrame

javax.swing.JFrame parentFrame

The parent JFrane in which this ImageSelectionGroupPanel is embedded.

minNImages

int minNImages

The minimum number of images in the group of images.

maxNImages

int maxNImages

The maximum number of images in the group of images.

panelList

java.util.List<E> panelList

The List of ImageSelectionGroupMemberPanels that form the group.

addImageButton

javax.swing.JButton addImageButton

The button to add another image to the set.

currentWorkingDirectory

java.io.File currentWorkingDirectory

imageClassToFilter

java.lang.Class<T> imageClassToFilter

componentGenerator

ImageSelectionGroupPanel.ComponentGenerator componentGenerator

weight

double weight

fileChangeCommitListeners

java.util.List<E> fileChangeCommitListeners

fileTextEditListeners

java.util.List<E> fileTextEditListeners

showVariables

boolean showVariables

Whether members of this group will display variables names.

Class com.xinapse.multisliceimage.ImageSelectionPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

setImageButton

javax.swing.JButton setImageButton

folderLabel

javax.swing.JLabel folderLabel

folderTextField

javax.swing.JTextField folderTextField

fileLabel

javax.swing.JLabel fileLabel

fileTextField

javax.swing.JTextField fileTextField

enableFileTextChangeListener

boolean enableFileTextChangeListener

A flag to cause generation of events to FileTextChangeListeners. Disabled during programmatic changes to the file text.

imageChooser

ImageFileChooser imageChooser

The ImageFileChooser that can be popped up to select a new image.

currentWorkingDirectory

java.io.File currentWorkingDirectory

The current working directory.

imageClassToFilter

java.lang.Class<T> imageClassToFilter

The class of image that will intially be filtered when the user first selects the image.

fileChangeCommitListeners

java.util.List<E> fileChangeCommitListeners

A List of ChangeListeners that will be notified if an image file change is committed (by the user pressing the return key).

fileTextEditListeners

java.util.List<E> fileTextEditListeners

A List of ChangeListeners that will be notified if the text is edited without being committed.

initialSize

java.awt.Dimension initialSize

The size used to get the preferredSize() once the components in this ImageSelectionPanel have been added to it.

acceptDicom

boolean acceptDicom

A flag set if selection DICOM image files is allowed.

Class com.xinapse.multisliceimage.InfoNotFoundException extends java.lang.Exception implements Serializable

Class com.xinapse.multisliceimage.InvalidColourMappingException extends java.lang.Exception implements Serializable

Class com.xinapse.multisliceimage.LogFileChooser extends javax.swing.JFileChooser implements Serializable

Class com.xinapse.multisliceimage.MultipleImageSelectionPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

parentComponent

java.awt.Component parentComponent

The Component in which this MultipleImageSelectionPanel is embedded.

currentWorkingDirectory

java.io.File currentWorkingDirectory

The current working directory.

imageClassToFilter

java.lang.Class<T> imageClassToFilter

The current class of images that is being filtered.

listModel

javax.swing.DefaultListModel listModel

The ListModel that contains the current list of images.

imagesList

javax.swing.JList imagesList

The JList that displays the list of images.

listTitleLabel

javax.swing.JLabel listTitleLabel

The title that is displayed above the list of images.

selectImagesButton

javax.swing.JButton selectImagesButton

A button to select a new list of images.

addImagesButton

javax.swing.JButton addImagesButton

A button to add images to the current list of images.

removeAllButton

javax.swing.JButton removeAllButton

A button to remove all images from the list of images.

removeSelectedButton

javax.swing.JButton removeSelectedButton

A button to remove selected images from the list of images.

upButton

javax.swing.JButton upButton

A button to move selected images up the list of images.

downButton

javax.swing.JButton downButton

A button to move selected images down the list of images.

changeListeners

java.util.List<E> changeListeners

A List of ChangeListeners that will be notified if the image files change in any way.

initialSize

java.awt.Dimension initialSize

The size used to get the preferredSize() once the components in this MultipleImageSelectionPanel have been added to it.

imageChooser

ImageFileChooser.LoadChooser imageChooser

Class com.xinapse.multisliceimage.MultiSliceImageException extends InvalidImageException implements Serializable

Class com.xinapse.multisliceimage.OutputImageSelectionPanel extends ImageSelectionPanel implements Serializable

Package com.xinapse.multisliceimage.Analyze

Class com.xinapse.multisliceimage.Analyze.ANZException extends MultiSliceImageException implements Serializable

Package com.xinapse.multisliceimage.roi

Class com.xinapse.multisliceimage.roi.ANegativeHandle extends AxisHandle implements Serializable

Class com.xinapse.multisliceimage.roi.APositiveHandle extends AxisHandle implements Serializable

Class com.xinapse.multisliceimage.roi.AxisHandle extends Handle implements Serializable

Class com.xinapse.multisliceimage.roi.BNegativeHandle extends AxisHandle implements Serializable

Class com.xinapse.multisliceimage.roi.BPositiveHandle extends AxisHandle implements Serializable

Class com.xinapse.multisliceimage.roi.CentreHandle extends Handle implements Serializable

Class com.xinapse.multisliceimage.roi.CombineMode.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

modeButtons

java.util.List<E> modeButtons

defaultButton

javax.swing.JRadioButton defaultButton

Class com.xinapse.multisliceimage.roi.ContourMode.ComboBox extends javax.swing.JComboBox implements Serializable

Class com.xinapse.multisliceimage.roi.CornerHandle extends Handle implements Serializable

Class com.xinapse.multisliceimage.roi.DuplicateROIException extends java.lang.Exception implements Serializable

Class com.xinapse.multisliceimage.roi.EastHandle extends EdgeHandle implements Serializable

Class com.xinapse.multisliceimage.roi.EdgeHandle extends Handle implements Serializable

Class com.xinapse.multisliceimage.roi.EllipticalROICreateDialog extends ROICreateDialog implements Serializable

Serialized Fields

centreXField

javax.swing.JTextField centreXField

centreYField

javax.swing.JTextField centreYField

axis1Field

javax.swing.JTextField axis1Field

axis2Field

javax.swing.JTextField axis2Field

thetaField

javax.swing.JTextField thetaField

Class com.xinapse.multisliceimage.roi.EndHandle extends Handle implements Serializable

Class com.xinapse.multisliceimage.roi.Handle extends java.awt.Point implements Serializable

Serialized Fields

size

int size

The size of the handle in screen pixels.

Class com.xinapse.multisliceimage.roi.HistoryDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

historyTable

javax.swing.JTable historyTable

nRows

int nRows

nCols

int nCols

nullEntry

java.lang.Object nullEntry

Class com.xinapse.multisliceimage.roi.LineROICreateDialog extends ROICreateDialog implements Serializable

Serialized Fields

x1Field

javax.swing.JTextField x1Field

y1Field

javax.swing.JTextField y1Field

x2Field

javax.swing.JTextField x2Field

y2Field

javax.swing.JTextField y2Field

Class com.xinapse.multisliceimage.roi.MarkerCreateDialog extends ROICreateDialog implements Serializable

Serialized Fields

xPositionField

javax.swing.JTextField xPositionField

yPositionField

javax.swing.JTextField yPositionField

Class com.xinapse.multisliceimage.roi.MaskMode.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

modeButtons

java.util.List<E> modeButtons

defaultButton

javax.swing.JRadioButton defaultButton

Class com.xinapse.multisliceimage.roi.NorthEastHandle extends CornerHandle implements Serializable

Class com.xinapse.multisliceimage.roi.NorthHandle extends EdgeHandle implements Serializable

Class com.xinapse.multisliceimage.roi.NorthWestHandle extends CornerHandle implements Serializable

Class com.xinapse.multisliceimage.roi.PenSizePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

penSizeSpinner

javax.swing.JSpinner penSizeSpinner

The JSpinner used to retain the pen size.

Class com.xinapse.multisliceimage.roi.RectangularROICreateDialog extends ROICreateDialog implements Serializable

Serialized Fields

xField

javax.swing.JTextField xField

yField

javax.swing.JTextField yField

widthField

javax.swing.JTextField widthField

heightField

javax.swing.JTextField heightField

Class com.xinapse.multisliceimage.roi.ROICreateDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

listener

CanAddROIToFrame listener

specificationPanel

javax.swing.JPanel specificationPanel

addButton

javax.swing.JButton addButton

doneButton

javax.swing.JButton doneButton

Class com.xinapse.multisliceimage.roi.ROIException extends java.lang.Exception implements Serializable

Class com.xinapse.multisliceimage.roi.ROIFileChooser extends javax.swing.JFileChooser implements Serializable

Class com.xinapse.multisliceimage.roi.ROIFileSelectionPanel extends com.xinapse.util.FileSelectionPanel implements Serializable

Class com.xinapse.multisliceimage.roi.ROIIntensitiesFileChooser extends ROIStatsFileChooser implements Serializable

Class com.xinapse.multisliceimage.roi.ROIPreferencesDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

displayer

com.xinapse.displayer.ImageDisplayer displayer

unselectedColorButton

com.xinapse.util.ColorSelectionButton unselectedColorButton

selectedColorButton

com.xinapse.util.ColorSelectionButton selectedColorButton

deletedColorButton

com.xinapse.util.ColorSelectionButton deletedColorButton

handleColorButton

com.xinapse.util.ColorSelectionButton handleColorButton

handleBorderColorButton

com.xinapse.util.ColorSelectionButton handleBorderColorButton

textColorButton

com.xinapse.util.ColorSelectionButton textColorButton

userColorButtons

com.xinapse.util.ColorSelectionButton[] userColorButtons

textSizeSpinner

javax.swing.JSpinner textSizeSpinner

A JSpinner for the annotation text font size.

showStatisticsCheckBox

javax.swing.JCheckBox showStatisticsCheckBox

snapCentreCheckBox

javax.swing.JCheckBox snapCentreCheckBox

showExtendedStatsCheckBox

javax.swing.JCheckBox showExtendedStatsCheckBox

mergeContoursCheckBox

javax.swing.JCheckBox mergeContoursCheckBox

penSizePanel

PenSizePanel penSizePanel

maskInsideButton

javax.swing.JRadioButton maskInsideButton

maskOutsideButton

javax.swing.JRadioButton maskOutsideButton

erodeDilatePercentSpinner

javax.swing.JSpinner erodeDilatePercentSpinner

A JSpinner for the erode/dilate percentage.

nUndosSpinner

javax.swing.JSpinner nUndosSpinner

A JSpinner for the number of undos retained.

saveFolderFollowsImageCheckBox

javax.swing.JCheckBox saveFolderFollowsImageCheckBox

Class com.xinapse.multisliceimage.roi.ROIStatsFileChooser extends com.xinapse.util.FileChooser.SaveChooser implements Serializable

Class com.xinapse.multisliceimage.roi.SouthEastHandle extends CornerHandle implements Serializable

Class com.xinapse.multisliceimage.roi.SouthHandle extends EdgeHandle implements Serializable

Class com.xinapse.multisliceimage.roi.SouthWestHandle extends CornerHandle implements Serializable

Class com.xinapse.multisliceimage.roi.StatsComparator extends java.lang.Object implements Serializable

Serialized Fields

statsType

StatsType statsType

Class com.xinapse.multisliceimage.roi.TextCreateDialog extends ROICreateDialog implements Serializable

Serialized Fields

xPositionField

javax.swing.JTextField xPositionField

yPositionField

javax.swing.JTextField yPositionField

annotationField

javax.swing.JTextField annotationField

Class com.xinapse.multisliceimage.roi.VertexHandle extends Handle implements Serializable

Serialized Fields

visible

boolean visible

Whether this handle should be drawn on screen.

Class com.xinapse.multisliceimage.roi.WestHandle extends EdgeHandle implements Serializable

Package com.xinapse.multisliceimage.UNC

Class com.xinapse.multisliceimage.UNC.UNCException extends MultiSliceImageException implements Serializable

Package com.xinapse.platform

Class com.xinapse.platform.LookAndFeelPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

buttons

javax.swing.JRadioButton[] buttons

Class com.xinapse.platform.PlatformException extends java.lang.Exception implements Serializable

Package com.xinapse.util

Class com.xinapse.util.AlphaPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

slider

javax.swing.JSlider slider

currentText

javax.swing.JTextField currentText

alphaChangeListeners

java.util.List<E> alphaChangeListeners

Class com.xinapse.util.AlreadyProcessedException extends java.lang.Exception implements Serializable

Class com.xinapse.util.BitSet extends java.lang.Object implements Serializable

serialVersionUID: 7997698588986878753L

Serialized Fields

bits

long[] bits

The actual bits.

the i'th bit is in bits[i/64] at position i%64 (where position 0 is the least significant).

nbits

int nbits

The number of bits that can be stored and accessed in this BitSet.

cachedCardinality

int cachedCardinality

Class com.xinapse.util.ButtonTabComponent extends javax.swing.JPanel implements Serializable

Serialized Fields

pane

javax.swing.JTabbedPane pane

Class com.xinapse.util.CancelledException extends java.lang.Exception implements Serializable

Serialized Fields

userObject

java.util.List<E> userObject

Class com.xinapse.util.ColorSelectionButton extends javax.swing.JButton implements Serializable

Serialized Fields

colourIcon

com.xinapse.util.ColorSelectionButton.ColorIcon colourIcon

colourChangeListeners

java.util.List<E> colourChangeListeners

Class com.xinapse.util.ColourScalesMenu extends javax.swing.JMenu implements Serializable

Serialized Fields

nativeColoursMenuItem

javax.swing.JRadioButtonMenuItem nativeColoursMenuItem

defaultColourMappingMenuItem

javax.swing.JRadioButtonMenuItem defaultColourMappingMenuItem

nativeColourMapping

ColourMapping nativeColourMapping

colourMenuListener

java.awt.event.ActionListener colourMenuListener

coloursButtonGroup

javax.swing.ButtonGroup coloursButtonGroup

separator

javax.swing.JSeparator separator

Class com.xinapse.util.ContrastAdjusterPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

changeableContrast

com.xinapse.util.ChangeableContrast changeableContrast

expandContrastRangeButton

com.xinapse.util.ExpandContrastButton expandContrastRangeButton

resetContrastRangeButton

com.xinapse.util.ResetContrastButton resetContrastRangeButton

contrastMinAdj

com.xinapse.util.IntensitySliderPanel contrastMinAdj

contrastMaxAdj

com.xinapse.util.IntensitySliderPanel contrastMaxAdj

autoContrastButton

javax.swing.JButton autoContrastButton

buttonsPanel

javax.swing.JPanel buttonsPanel

Class com.xinapse.util.DoneButton extends javax.swing.JButton implements Serializable

Class com.xinapse.util.ExpandContrastButton extends javax.swing.JButton implements Serializable

Serialized Fields

ICON_IMAGE

javax.swing.ImageIcon ICON_IMAGE

Class com.xinapse.util.FileChooser extends javax.swing.JFileChooser implements Serializable

Serialized Fields

extensions

java.lang.String[] extensions

Class com.xinapse.util.FileChooser.LoadChooser extends com.xinapse.util.FileChooser implements Serializable

Class com.xinapse.util.FileChooser.SaveChooser extends com.xinapse.util.FileChooser implements Serializable

Class com.xinapse.util.FileSelectionPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

messageShower

MessageShower messageShower

extensions

java.lang.String[] extensions

fileTypeDescription

java.lang.String fileTypeDescription

icon

javax.swing.ImageIcon icon

useDescription

java.lang.String useDescription

fileSelectButton

javax.swing.JButton fileSelectButton

fileFilter

com.xinapse.util.FolderOrFileFilter fileFilter

load

boolean load

fileNameField

javax.swing.JTextField fileNameField

fileChooser

com.xinapse.util.FileChooser fileChooser

changeListeners

java.util.List<E> changeListeners

Class com.xinapse.util.FixedSizeLabel extends javax.swing.JLabel implements Serializable

Serialized Fields

size

java.awt.Dimension size

Class com.xinapse.util.ImageOrganiserFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

imageDisplayer

com.xinapse.displayer.ImageDisplayer imageDisplayer

scrollableContentsPane

javax.swing.JScrollPane scrollableContentsPane

statusText

javax.swing.JTextField statusText

outputPanel

javax.swing.JPanel outputPanel

loadResultButton

javax.swing.JRadioButton loadResultButton

saveToDiskButton

javax.swing.JRadioButton saveToDiskButton

doItButton

javax.swing.JButton doItButton

doneButton

javax.swing.JButton doneButton

actionWorkers

java.util.List<E> actionWorkers

quitMe

boolean quitMe

bottomPanel

javax.swing.JPanel bottomPanel

actionDescription

java.lang.String actionDescription

preferencesPanel

com.xinapse.util.PreferencesPanel preferencesPanel

Class com.xinapse.util.InfoList extends java.util.ArrayList<InfoItem> implements Serializable

Class com.xinapse.util.InfoListException extends java.lang.Exception implements Serializable

Class com.xinapse.util.IntensityRelation.IntensityRelationButton extends com.xinapse.util.NStateButton<IntensityRelation> implements Serializable

Serialized Fields

prefs

java.util.prefs.Preferences prefs

The Preferences to which any changes to this button will be saved.

Class com.xinapse.util.IntensityRelation.PanelGenerator.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

intensityRelationButtons

javax.swing.JRadioButton[] intensityRelationButtons

Class com.xinapse.util.IntensitySliderPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

slider

javax.swing.JSlider slider

currentText

javax.swing.JTextField currentText

slope

double slope

intercept

double intercept

autoContrastButton

javax.swing.JButton autoContrastButton

currentDataType

PixelDataType currentDataType

title

java.lang.String title

minimised

boolean minimised

changeListeners

java.util.List<E> changeListeners

Class com.xinapse.util.InvalidArgumentException extends java.lang.Exception implements Serializable

Class com.xinapse.util.InvalidComponentStateException extends java.lang.Exception implements Serializable

Class com.xinapse.util.MultiContrastAnalysisFrame extends com.xinapse.util.ImageOrganiserFrame implements Serializable

Serialized Fields

roamingResponseDialog

com.xinapse.util.RoamingResponseDialog roamingResponseDialog

imageInputPanel

com.xinapse.util.MultiContrastSelectionPanel imageInputPanel

contrastDescription

java.lang.String contrastDescription

showResponseWorker

com.xinapse.util.MultiContrastAnalysisFrame.ShowResponseWorker showResponseWorker

roiStatsCache

com.xinapse.util.ROIStatsCache roiStatsCache

changeListeners

java.util.List<E> changeListeners

Class com.xinapse.util.MultiContrastSelectionPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

messageShower

MessageShower messageShower

contrastDescription

java.lang.String contrastDescription

inputImages

MultiSliceImage[] inputImages

cacheLock

java.lang.Object cacheLock

multipleInputOnePerContrastButton

javax.swing.JRadioButton multipleInputOnePerContrastButton

multipleInputOnePerSliceButton

javax.swing.JRadioButton multipleInputOnePerSliceButton

singleInputButton

javax.swing.JRadioButton singleInputButton

imageSelectionPanel

ImageSelectionPanel imageSelectionPanel

multipleImageSelectionPanel

MultipleImageSelectionPanel multipleImageSelectionPanel

contiguousContrastsRadioButton

javax.swing.JRadioButton contiguousContrastsRadioButton

contiguousSlicesRadioButton

javax.swing.JRadioButton contiguousSlicesRadioButton

singleInputImageSetupPanel

javax.swing.JPanel singleInputImageSetupPanel

nContrastsSpinner

javax.swing.JSpinner nContrastsSpinner

defaultNContrasts

int defaultNContrasts

changeListeners

java.util.List<E> changeListeners

Class com.xinapse.util.MultipleFileSelectionPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

parentFrame

javax.swing.JFrame parentFrame

currentWorkingDirectory

java.io.File currentWorkingDirectory

listModel

javax.swing.DefaultListModel listModel

filesList

javax.swing.JList filesList

listTitleLabel

javax.swing.JLabel listTitleLabel

selectFilesButton

javax.swing.JButton selectFilesButton

addFilesButton

javax.swing.JButton addFilesButton

removeAllButton

javax.swing.JButton removeAllButton

removeSelectedButton

javax.swing.JButton removeSelectedButton

upButton

javax.swing.JButton upButton

downButton

javax.swing.JButton downButton

initialWidth

java.lang.Integer initialWidth

Class com.xinapse.util.NStateButton extends javax.swing.JButton implements Serializable

Serialized Fields

states

javax.swing.Icon[] states

stateIndex

int stateIndex

Class com.xinapse.util.PageOrientationComboBox extends javax.swing.JComboBox implements Serializable

Class com.xinapse.util.PageSizeComboBox extends javax.swing.JComboBox implements Serializable

Class com.xinapse.util.PDFFileChooser extends javax.swing.JFileChooser implements Serializable

Class com.xinapse.util.PixelComparator extends java.lang.Object implements Serializable

Serialized Fields

nCols

int nCols

pixelsPerSlice

int pixelsPerSlice

Class com.xinapse.util.PreferencesPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

prefsSettable

PreferencesSettable prefsSettable

preferencesNodeName

java.lang.String preferencesNodeName

Class com.xinapse.util.RecentImagesMenu extends javax.swing.JMenu implements Serializable

Serialized Fields

canLoadImage

com.xinapse.util.CanLoadImage canLoadImage

Class com.xinapse.util.RecentImagesMenu.RecentImagesPopupMenu extends javax.swing.JPopupMenu implements Serializable

Class com.xinapse.util.ResetContrastButton extends javax.swing.JButton implements Serializable

Serialized Fields

ICON_IMAGE

javax.swing.ImageIcon ICON_IMAGE

Class com.xinapse.util.RoamingResponseDialog extends com.xinapse.graph.GraphDialog implements Serializable

Serialized Fields

parentFrame

com.xinapse.util.MultiContrastAnalysisFrame parentFrame

plotModePanel

com.xinapse.util.RoamingResponseDialog.MultiROIPlotMode.Panel plotModePanel

Class com.xinapse.util.RoamingResponseDialog.MultiROIPlotMode.Panel extends javax.swing.JPanel implements Serializable

Serialized Fields

registeredListeners

java.util.List<E> registeredListeners

buttons

javax.swing.JRadioButton[] buttons

Class com.xinapse.util.XinapseFormattedTextField extends javax.swing.JFormattedTextField implements Serializable

Serialized Fields

actionListeners

java.util.List<E> actionListeners

preferredWidth

int preferredWidth

Class com.xinapse.util.XMLFileChooser extends javax.swing.JFileChooser implements Serializable